Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation.

BMC genomics - 16 Jan 2013

Ward Judson A, Bhangoo Jasbir, Fernández-Fernández Felicidad, Moore Patrick, Swanson J D, Viola Roberto, Velasco Riccardo, Bassil Nahla, Weber Courtney A, Sargent Daniel J

Abstract excerpt

BACKGROUND: Rapid development of highly saturated genetic maps aids molecular breeding, which can accelerate gain per breeding cycle in woody perennial plants such as Rubus idaeus (red raspberry). Recently, robust genotyping methods based on high-throughput sequencing were developed, which provide high marker density, but result in some genotype errors and a large number of missing genotype values. Imputation can...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Chromosome Mapping
Share to Genetic Markers

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome, Plant

Share to Genotyping Techniques

Share to High-Throughput Nucleotide Sequencing

Share to Microsatellite Repeats

Share to Polymorphism, Single Nucleotide

Share to Rosaceae

Source

Open in PubMed Open full text

Identifiers

PMID: 23324311
DOI: 10.1186/1471-2164-14-2
PMCID: PMC3575332

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 1 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation.PMID 23324311Read ↗

Genotype-Corrector: improved genotype calls for genetic mapping in F2 and RIL populations.Semantic proximity Read ↗

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations.Semantic proximity Read ↗

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra.Semantic proximity Read ↗

A high-density SNP-based linkage map using genotyping-by-sequencing and its utilization for improved genome assembly of chickpea (Cicer arietinum L.).Semantic proximity Read ↗

Exploiting genotyping by sequencing to characterize the genomic structure of the American cranberry through high-density linkage mapping.Semantic proximity Read ↗

Efficient genome-wide genotyping strategies and data integration in crop plants.Semantic proximity Read ↗

Genotype imputation improves SNP density and genetic analysis accuracy in slash pine.Semantic proximity Read ↗

An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly.Semantic proximity Read ↗

Accounting for Errors in Low Coverage High-Throughput Sequencing Data When Constructing Genetic Maps Using Biparental Outcrossed Populations.Semantic proximity Read ↗

Heterozygous Mapping Strategy (HetMappS) for High Resolution Genotyping-By-Sequencing Markers: A Case Study in Grapevine.Semantic proximity Read ↗

Optimizing imputation of marker data from genotyping-by-sequencing (GBS) for genomic selection in non-model species: Rubber tree (Hevea brasiliensis) as a case study.Semantic proximity Read ↗

Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.