Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

VariBench: a benchmark database for variations.

Human mutation - 1 Jan 2013

Sasidharan Nair Preethy, Vihinen Mauno

Abstract excerpt

Several computational methods have been developed for predicting the effects of rapidly expanding variation data. Comparison of the performance of tools has been very difficult as the methods have been trained and tested with different datasets. Until now, unbiased and representative benchmark datasets have been missing. We have developed a benchmark database suite, VariBench, to overcome this problem. VariBench...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Benchmarking
Share to Computational Biology
Share to Databases, Genetic

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Internet

Share to Proteins

Share to Reproducibility of Results

Share to Sequence Analysis

Source

Identifiers

PMID: 22903802
DOI: 10.1002/humu.22204

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

VariBench: a benchmark database for variations.PMID 22903802Read ↗

Variation Benchmark Datasets: Update, Criteria, Quality and ApplicationsSemantic proximity Read ↗

VariSNP, a benchmark database for variations from dbSNP.Semantic proximity Read ↗

LenVarDB: database of length-variant protein domains.Semantic proximity Read ↗

Systematics for types and effects of RNA variations.Semantic proximity Read ↗

SV-plaudit: A cloud-based framework for manually curating thousands of structural variants.Semantic proximity Read ↗

MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.Semantic proximity Read ↗

Perturbation Catalogue: Democratising genetic perturbation data for research and drug discoverySemantic proximity Read ↗

MutaNET: a tool for automated analysis of genomic mutations in gene regulatory networks.Semantic proximity Read ↗

NAVIP: Unraveling the influence of neighboring small sequence variants on functional impact prediction.Semantic proximity Read ↗

PdbAlign, PdbDist and DistAlign: tools to aid in relating sequence variability to structure.Semantic proximity Read ↗

Protein structure prediction from sequence variation.Semantic proximity Read ↗

The MBLOSUM: a server for deriving mutation targets and position-specific substitution rates.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.