Article
Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.
BMC genomics - 31 Jul 2012
You Frank M, Deal Karin R, Wang Jirui, Britton Monica T, Fass Joseph N, Lin Dawei, Dandekar Abhaya M, Leslie Charles A, Aradhya Mallikarjuna, Luo Ming-Cheng, Dvorak Jan
Abstract excerpt
BACKGROUND: A genome-wide set of single nucleotide polymorphisms (SNPs) is a valuable resource in genetic research and breeding and is usually developed by re-sequencing a genome. If a genome sequence is not available, an alternative strategy must be used. We previously reported the development of a pipeline (AGSNP) for genome-wide SNP discovery in coding sequences and other single-copy DNA without a complete...
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