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Article

A mutation-centric approach to identifying pharmacogenomic relations in text.

Journal of biomedical informatics - 1 Oct 2012

Rance Bastien, Doughty Emily, Demner-Fushman Dina, Kann Maricel G, Bodenreider Olivier

Abstract excerpt

OBJECTIVES: To explore the notion of mutation-centric pharmacogenomic relation extraction and to evaluate our approach against reference pharmacogenomic relations. METHODS: From a corpus of MEDLINE abstracts relevant to genetic variation, we identify co-occurrences between drug mentions extracted using MetaMap and RxNorm, and genetic variants extracted by EMU. The recall of our approach is evaluated against...

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Identifiers

PMID: 22683993
DOI: 10.1016/j.jbi.2012.05.003
PMCID: PMC3438287

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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