Variability in the P1 gene helps to refine phylogenetic relationships among leek yellow stripe virus isolates from garlic.

doi:10.1007/s00705-011-1132-7

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Article

Variability in the P1 gene helps to refine phylogenetic relationships among leek yellow stripe virus isolates from garlic.

Archives of virology - 1 Jan 2012

Yoshida Naoto, Shimura Hanako, Yamashita Kazuo, Suzuki Masahiko, Masuta Chikara

Abstract excerpt

Nucleotide sequences from the P1 gene and the 5' untranslated region of leek yellow stripe virus (LYSV), collected from several locations, were used to refine the phylogenetic relationships among the isolates. Multiple alignments revealed three distinct regions of insertions and deletions to classify LYSVs. In our phylogenetic analyses, the LYSV isolates separated into two major groups (N-type and S-type). S-type...

Topics

5' Untranslated Regions
Base Sequence
Garlic
Genetic Variation
Molecular Sequence Data
Phylogeny
Plant Diseases
Potyvirus
Viral Proteins

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Open in PubMed

Identifiers

PMID: 21964945
DOI: 10.1007/s00705-011-1132-7

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