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Article

Detection of cis-acting regulatory SNPs using allelic expression data.

Genetic epidemiology - 1 Sept 2011

Xiao Rui, Scott Laura J

Abstract excerpt

Allelic expression (AE) imbalance between the two alleles of a gene can be used to detect cis-acting regulatory SNPs (rSNPs) in individuals heterozygous for a transcribed SNP (tSNP). In this paper, we propose three tests for AE analysis focusing on phase-unknown data and any degree of linkage disequilibrium (LD) between the rSNP and tSNP: a test based on the minimum P-value of a one-sided F test and a two-sided t...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 21769929
DOI: 10.1002/gepi.20601
PMCID: PMC4372992

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