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Article

Molecular and genetic dissection of the USDA rice mini-core collection using high-density SNP markers.

Plant science : an international journal of experimental plant biology - 1 Jul 2021

Song Jian-Min, Arif Muhammad, Zi Yan, Sze Sing-Hoi, Zhang Meiping, Zhang Hong-Bin

Abstract excerpt

Molecular tools and knowledge of crop germplasm are vital for their effective utilization. In this study, we developed 40,866 high-quality and well distributed SNPs for a rice mini-core collection (RMC) developed by the United States Department of Agriculture (USDA). The high-quality SNPs clustered the USDA-RMC into five subpopulations (Ind, indica; Aus, aus; Afr, African rice; TeJ, temperate japonica; TrJ,...

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Genes, Plant
Genetic Markers
Oryza
Phylogeny
Plant Breeding

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Polymorphism, Single Nucleotide

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PMID: 34034867
DOI: 10.1016/j.plantsci.2021.110910

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