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Article

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform.

BMC bioinformatics - 31 May 2011

Eckel-Passow Jeanette E, Atkinson Elizabeth J, Maharjan Sooraj, Kardia Sharon L R, de Andrade Mariza

Abstract excerpt

BACKGROUND: Copy number data are routinely being extracted from genome-wide association study chips using a variety of software. We empirically evaluated and compared four freely-available software packages designed for Affymetrix SNP chips to estimate copy number: Affymetrix Power Tools (APT), Aroma.Affymetrix, PennCNV and CRLMM. Our evaluation used 1,418 GENOA samples that were genotyped on the Affymetrix...

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Identifiers

PMID: 21627824
DOI: 10.1186/1471-2105-12-220
PMCID: PMC3146450

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

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