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Article

A standard variation file format for human genome sequences.

Genome biology - 1 Jan 2010

Reese Martin G, Moore Barry, Batchelor Colin, Salas Fidel, Cunningham Fiona, Marth Gabor T, Stein Lincoln, Flicek Paul, Yandell Mark, Eilbeck Karen

Abstract excerpt

Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human genomes in GVF format, is freely available for community analysis from the Sequence Ontology website and from an Amazon elastic...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 20796305
DOI: 10.1186/gb-2010-11-8-r88
PMCID: PMC2945790

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026. Manifest publication-graph-cohort-2026-09-05.1.

Source receipt: pubmed, retrieved 5 Sept 2026.

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