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Discovery, validation and characterization of 1039 cattle single nucleotide polymorphisms.

Animal genetics - 1 Aug 2010

Donthu R, Larkin D M, Heaton M P, Lewin H A

Abstract excerpt

We identified approximately 13 000 putative single nucleotide polymorphisms (SNPs) by comparison of repeat-masked BAC-end sequences from the cattle RPCI-42 BAC library with whole-genome shotgun contigs of cattle genome assembly Btau 1.0. Genotyping of a subset of these SNPs was performed on a panel containing 186 DNA samples from 18 cattle breeds including 43 trios. Of 1039 SNPs confirmed as polymorphic in the...

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PMID: 19958345
DOI: 10.1111/j.1365-2052.2009.02008.x

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