Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Analysis of site frequency spectra from Arabidopsis with context-dependent corrections for ancestral misinference.

Plant physiology - 1 Feb 2009

Morton Brian R, Dar Vaqaar-un-Nisa, Wright Stephen I

Abstract excerpt

Previous studies have shown that the pattern of single nucleotide polymorphism (SNP) in Arabidopsis (Arabidopsis thaliana) deviates from the distribution expected under a neutral model. Here, we test whether or not ancestral misinference could explain this deviation. We start by showing that there are significant and complex influences of context on mutation dynamics as inferred from SNP frequency, in...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Arabidopsis
Share to Arabidopsis Proteins
Share to Codon

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Dinucleoside Phosphates

Share to Genes, Plant

Share to Genome, Plant

Share to Kinetics

Share to Zea mays

Source

Open in PubMed Open full text

Identifiers

PMID: 19019983
DOI: 10.1104/pp.108.127787
PMCID: PMC2633827

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Analysis of site frequency spectra from Arabidopsis with context-dependent corrections for ancestral misinference.PMID 19019983Read ↗

Mutation bias reflects natural selection in Arabidopsis thaliana.Semantic proximity Read ↗

Quantifying the Evolution of SNPs That Affect RNA Secondary Structure in Arabidopsis thaliana Genes.Semantic proximity Read ↗

Assessing substitution variation across sites in grass chloroplast DNA.Semantic proximity Read ↗

Context-dependent mutation rates may cause spurious signatures of a fixation bias favoring higher GC-content in humans.Semantic proximity Read ↗

Context dependence, ancestral misidentification, and spurious signatures of natural selection.Semantic proximity Read ↗

The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA.Semantic proximity Read ↗

Context and Mutation in Gymnosperm Chloroplast DNA.Semantic proximity Read ↗

Context-Dependent Mutation Dynamics, Not Selection, Explains the Codon Usage Bias of Most Angiosperm Chloroplast Genes.Semantic proximity Read ↗

Site frequency spectra from genomic SNP surveys.Semantic proximity Read ↗

Do Noncoding and Coding Sites in Angiosperm Chloroplast DNA Have Different Mutation Processes?Semantic proximity Read ↗

Genomic variations and distinct evolutionary rate of rare alleles in Arabidopsis thaliana.Semantic proximity Read ↗

Genome-Wide Analysis of Colonization History and Concomitant Selection in Arabidopsis lyrata.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.