Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Ecophysiological significance of scale-dependent patterns in prokaryotic genomes unveiled by a combination of statistic and genometric analyses.

Genomics - 1 Jun 2008

Garcia Juan A L, Bartumeus Frederic, Roche David, Giraldo Jesús, Stanley H Eugene, Casamayor Emilio O

Abstract excerpt

We combined genometric (DNA walks) and statistical (detrended fluctuation analysis) methods on 456 prokaryotic chromosomes from 309 different bacterial and archaeal species to look for specific patterns and long-range correlations along the genome and relate them to ecological lifestyles. The position of each nucleotide along the complete genome sequence was plotted on an orthogonal plane (DNA landscape), and...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Archaea
Share to Bacterial Physiological Phenomena

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Chromosomes, Bacterial

Share to Data Interpretation, Statistical

Share to Ecology

Share to Genome, Archaeal

Share to Genome, Bacterial

Share to Sequence Analysis, DNA

Source

Identifiers

PMID: 18420375
DOI: 10.1016/j.ygeno.2008.03.001

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Ecophysiological significance of scale-dependent patterns in prokaryotic genomes unveiled by a combination of statistic and genometric analyses.PMID 18420375Read ↗

Investigating the relationship between genome structure, composition, and ecology in prokaryotes.Semantic proximity Read ↗

Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli.Semantic proximity Read ↗

Prokaryotic nucleotide composition is shaped by both phylogeny and the environment.Semantic proximity Read ↗

Genome Complexity Browser: estimation and visualization of prokaryote genome variabilitySemantic proximity Read ↗

The driving force behind genomic diversity.Semantic proximity Read ↗

Information-theoretic characterization of the complete genotype-phenotype map of a complex pre-biotic world: Comment on "From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics" by Susanna Manrubia et al.Semantic proximity Read ↗

Selection for ancient periodic motifs that do not impart DNA bending.Semantic proximity Read ↗

Quantitative measure of randomness and order for complete genomes.Semantic proximity Read ↗

Shannon information in complete genomes.Semantic proximity Read ↗

Shannon information in complete genomes.Semantic proximity Read ↗

Predicting Ecosystem Metaphenome from Community Metagenome: A Grand Challenge for Environmental BiologySemantic proximity Read ↗

Fine-structured multi-scaling long-range correlations in completely sequenced genomes--features, origin, and classification.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.