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Article

Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.

Genome biology - 1 Jan 2008

Kim HyeRan, Hurwitz Bonnie, Yu Yeisoo, Collura Kristi, Gill Navdeep, SanMiguel Phillip, Mullikin James C, Maher Christopher, Nelson William, Wissotski Marina, Braidotti Michele, Kudrna David, Goicoechea José Luis, Stein Lincoln, Ware Doreen, Jackson Scott A, Soderlund Carol, Wing Rod A

Abstract excerpt

We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the...

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Share to Chromosomes, Artificial, Bacterial
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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 18304353
DOI: 10.1186/gb-2008-9-2-r45
PMCID: PMC2374706

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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