Article
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
Nature genetics - 1 Feb 2018
Zhao Qiang, Feng Qi, Lu Hengyun, Li Yan, Wang Ahong, Tian Qilin, Zhan Qilin, Lu Yiqi, Zhang Lei, Huang Tao, Wang Yongchun, Fan Danlin, Zhao Yan, Wang Ziqun, Zhou Congcong, Chen Jiaying, Zhu Chuanrang, Li Wenjun, Weng Qijun, Xu Qun, Wang Zi-Xuan, Wei Xinghua, Han Bin, Huang Xuehui
Abstract excerpt
The rich genetic diversity in Oryza sativa and Oryza rufipogon serves as the main sources in rice breeding. Large-scale resequencing has been undertaken to discover allelic variants in rice, but much of the information for genetic variation is often lost by direct mapping of short sequence reads onto the O. sativa japonica Nipponbare reference genome. Here we constructed a pan-genome dataset of the O. sativa-O....
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