Article
Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis.
Physiological genomics - 13 Apr 2004
Yazaki Junshi, Shimatani Zenpei, Hashimoto Akiko, Nagata Yuko, Fujii Fumiko, Kojima Keiichi, Suzuki Kohji, Taya Toshiki, Tonouchi Mio, Nelson Charles, Nakagawa Allen, Otomo Yasuhiro, Murakami Kazuo, Matsubara Kenichi, Kawai Jun, Carninci Piero, Hayashizaki Yoshihide, Kikuchi Shoshi
Abstract excerpt
We collected and completely sequenced 32,127 full-length complementary DNA clones from Oryza sativa L. ssp. japonica cv. "Nipponbare." Mapping of these clones to genomic DNA revealed approximately 20,500 transcriptional units (TUs) in the rice genome. For each TU, we selected 60-mers using an algorithm that took into account some DNA conditions such as base composition and sequence complexity. Using in situ...
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