Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

TOPAL 2.0: improved detection of mosaic sequences within multiple alignments.

Bioinformatics (Oxford, England) - 1 Feb 2000

McGuire G, Wright F

Abstract excerpt

MOTIVATION: The Dss statistic was proposed by McGuire et al. (Mol. Biol. Evol., 14, 1125-1131, 1997) for scanning data sets for the presence of recombination, an important step in some phylogenetic analyses. The statistic, however, could not distinguish well between among-site rate variation and recombination, and had no statistical test for significant values. This paper addresses these shortfalls. RESULTS: A...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Genetic Variation
Share to Mathematical Computing

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Recombination, Genetic

Share to Sequence Alignment

Share to Software

Source

Identifiers

PMID: 10842734
DOI: 10.1093/bioinformatics/16.2.130

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

TOPAL 2.0: improved detection of mosaic sequences within multiple alignments.PMID 10842734Read ↗

Detecting interspecific recombination with a pruned probabilistic divergence measure.Semantic proximity Read ↗

Align-m--a new algorithm for multiple alignment of highly divergent sequences.Semantic proximity Read ↗

Simultaneous statistical multiple alignment and phylogeny reconstruction.Semantic proximity Read ↗

apex: phylogenetics with multiple genes.Semantic proximity Read ↗

DIVAA: analysis of amino acid diversity in multiple aligned protein sequences.Semantic proximity Read ↗

PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic change.Semantic proximity Read ↗

SWAN: sliding window analysis of nucleotide sequence variability.Semantic proximity Read ↗

CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing.Semantic proximity Read ↗

INSTRAL: Discordance-aware Phylogenetic Placement using Quartet ScoresSemantic proximity Read ↗

An exact nonparametric method for inferring mosaic structure in sequence triplets.Semantic proximity Read ↗

PAML 4: phylogenetic analysis by maximum likelihood.Semantic proximity Read ↗

A test for heterotachy using multiple pairs of sequences.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.