Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline

Abstract excerpt

<title>Abstract</title> <p>Antimicrobial resistant (AMR) pathogens represent urgent threats to human health, and their surveillance is of paramount importance. Metagenomic next generation sequencing (mNGS) has revolutionized such efforts, but remains challenging due to the lack of open-access bioinformatics tools capable of simultaneously analyzing both microbial and AMR gene sequences. To address this need, we d...

Topics

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• Gut microbiota and health
• Mycobacterium research and diagnosis
• Pneumocystis jirovecii pneumonia detection and treatment
• Pneumonia and Respiratory Infections
• Respiratory viral infections research

Identifiers and source

Literature Corpus work

f2dc0780-cd97-5291-8575-7e20f3441a60

DOI

10.21203/rs.3.rs-4271356/v1