Article

Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows

2022-07-10

Abstract excerpt

<h4>Background</h4> Many open-source workflow systems have made bioinformatics data analysis procedures portable. Sharing these workflows provides researchers easy access to high-quality analysis methods without the requirement of computational expertise. However, published workflows are not always guaranteed to be reliably reusable. Therefore, a system is needed to lower the cost of sharing workflows in a reusab...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: f2da6d48-0152-5c70-8196-df78bdce3b4b
DOI: 10.1101/2022.07.08.499265

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflowsDOI 10.1101/2022.07.08.499265Read

BioTracs: A transversal framework for computational workflow standardization and traceabilitySemantic proximity Read

Orchestrating and sharing large multimodal data for transparent and reproducible researchSemantic proximity Read

BioTracs: A transversal framework for computational workflow standardization and traceabilitySemantic proximity Read

Developing a standardized but extendable framework to increase the findability of infectious disease datasetsSemantic proximity Read

Playbook Workflow Builder: Interactive Construction of Bioinformatics Workflows from a Network of MicroservicesSemantic proximity Read

Optimizing Image Data Management: A Workflow-Driven Approach for FAIR and Reusable High-Content Screening pipelines with OMEROSemantic proximity Read

FAIRness assessment of the metadata of omics datasets in online repositoriesSemantic proximity Read

The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund ProgramsSemantic proximity Read

Design considerations for workflow management systems use in production genomics research and the clinicSemantic proximity Read

Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.Semantic proximity Read

The Rise of Open Data Practices Among Bioscientists at the University of EdinburghSemantic proximity Read

Keemei: cloud-based validation of tabular bioinformatics file formats in Google SheetsSemantic proximity Read