Article

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse

2017-09-14

Abstract excerpt

RNA-sequencing (RNA-seq) is currently the leading technology for genome-wide transcript quantification. While the volume of RNA-seq data is rapidly increasing, the currently publicly available RNA-seq data is provided mostly in raw form, with small portions processed non- uniformly. This is mainly because the computational demand, particularly for the alignment step, is a significant barrier for global and integra...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: de9cbc0f-3ebf-5e16-ba44-cd1e7711f552
DOI: 10.1101/189092

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Massive Mining of Publicly Available RNA-seq Data from Human and MouseDOI 10.1101/189092Read

recount3: summaries and queries for large-scale RNA-seq expression and splicingSemantic proximity Read

RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEOSemantic proximity Read

The GENCODE CLS project: massively expanding the lncRNA catalog through capture long-read RNA sequencingSemantic proximity Read

GeneFriends 2021: Updated co-expression databases and tools for human and mouse genes and transcriptsSemantic proximity Read

<tt>recount</tt> : A large-scale resource of analysis-ready RNA-seq expression dataSemantic proximity Read

GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysisSemantic proximity Read

The Molecular Subtyping Resource (MouSR): a user-friendly tool for rapid biological discovery from human or mouse transcriptional dataSemantic proximity Read

Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public dataSemantic proximity Read

Integrated analysis of a compendium of RNA-Seq datasets for splicing factorsSemantic proximity Read

Computational Analysis of RNA-Seq Data from Airway Epithelial Cells for Studying Lung Disease.Semantic proximity Read

TransXplorer: an automated translational discovery platform for RNA-seq dataSemantic proximity Read

recount workflow: Accessing over 70,000 human RNA-seq samples with BioconductorSemantic proximity Read