Article

Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)

2018-10-23

Abstract excerpt

Sub-species nomenclature systems of pathogens are increasingly based on sequence data. The use of phylogenetics to identify and differentiate between clusters of genetically similar pathogens is particularly prevalent in virology from the nomenclature of human papillomaviruses to highly pathogenic avian influenza (HPAI) H5Nx viruses. These nomenclature systems rely on absolute genetic distance thresholds to define...

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Literature Corpus work: c9d59e65-9e73-5251-aa8d-c9a5511cd524
DOI: 10.1101/446716

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