Viewing RNA-seq data on the entire human genome

Abstract excerpt

RNA-Seq Viewer is a web application that enables users to visualize genome-wide expression data from NCBI’s Sequence Read Archive (SRA) and Gene Expression Omnibus (GEO) databases. The application prototype was created by a small team during a three-day hackathon facilitated by NCBI at Brandeis University. The backend data pipeline was developed and deployed on a shared AWS EC2 instance. Source code is available a...

Topics

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• DNA Copy Number Variations
• Exome
• Genetic Association Studies
• Genetic Predisposition to Disease
• High-Throughput Nucleotide Sequencing
• Open Reading Frames
• Quality Control
• Sequence Analysis, DNA

Identifiers and source

Literature Corpus work

bd21d8ff-19a5-5e3b-8e4f-e2a5cc1b90e7

DOI

10.12688/f1000research.9762.1