Article

Fully Automated Abstraction of Longitudinal Breast Oncology Records with Off-The-Shelf Large Language Models

2026-03-25

Abstract excerpt

<h4>Background</h4> Manual chart abstraction is a major bottleneck in clinical research. In oncology, important outcomes such as disease recurrence and the treatment history are often only documented in clinical notes, limiting the scale and quality of observational and epidemiologic studies. We developed an open-source pipeline that, in a HIPAA-compliant setting, can use any commercially available large language...

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Literature Corpus work: b905f8fa-06b5-58b2-9921-a1011f17e816
DOI: 10.64898/2026.03.23.26349012

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