Article

Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseases

2023-09-18

Abstract excerpt

<h4>ABSTRACT</h4> The genomes of the fungus Magnaporthe oryzae that causes blast diseases on diverse grass species, including major crop plants, have indispensable core-chromosomes and may contain one or more additional supernumerary chromosomes, also known as mini-chromosomes. The mini-chromosome is speculated to play a role in fungal biology, provide effector gene mobility, and may transfer between strains. To...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 8de32dfa-28db-5625-b7fd-914759973c8e
DOI: 10.1101/2023.09.17.558148

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseasesDOI 10.1101/2023.09.17.558148Read

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific lineages of the blast fungusSemantic proximity Read

Evolution of supernumerary chromosomes in wheat blast fungal pathogensSemantic proximity Read

Rapid mini-chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and ZambiaSemantic proximity Read

Effector Gene Reshuffling Involves Dispensable Mini-chromosomes in the Wheat Blast FungusSemantic proximity Read

Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus.Semantic proximity Read

Distinct genomic contexts predict gene presence-absence variation in different pathotypes of a fungal plant pathogenSemantic proximity Read

The extrachromosomal circular DNAs of the rice blast pathogen <i>Magnaporthe oryzae</i> contain a wide variety of LTR retrotransposons, genes, and effectorsSemantic proximity Read

Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineagesSemantic proximity Read

Highly dynamic supernumerary mini-chromosomes in a <i>Magnaporthe oryzae</i> strainSemantic proximity Read

Recently expanded clonal lineages of the rice blast fungus display distinct patterns of presence/absence of effector genesSemantic proximity Read

Near telomere-to-telomere nuclear phased chromosomes of the dikaryotic wheat fungus <i>Rhizoctonia cerealis</i>Semantic proximity Read

Distinct genomic contexts predict gene presence–absence variation in different pathotypes of Magnaporthe oryzaeSemantic proximity Read