Article

Systematic benchmarking of foundation models and classical baselines for microbiome-based disease prediction

2026-02-25

Abstract excerpt

<title>Abstract</title> <p> <bold>Background:</bold> Microbiome-based disease prediction is often hindered by sparse, compositional features and substantial inter-study heterogeneity. Foundation models and LLM-derived representations could, in principle, improve robustness and cross-cohort generalization, but their utility for microbiome prediction has not been systematically benchmarked. <bold>Results:</bold>...

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Literature Corpus work: 876e93de-474b-59cb-80ee-0517c50a4a0e
DOI: 10.21203/rs.3.rs-8912605/v1

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