Article
BubbleGun: Enumerating Bubbles and Superbubbles in Genome Graphs
2021-03-23
Abstract excerpt
<h4>Motivation</h4> With the fast development of third generation sequencing machines, de novo genome assembly is becoming a routine even for larger genomes. Graph-based representations of genomes arise both as part of the assembly process, but also in the context of pangenomes representing a population. In both cases, polymorphic loci lead to bubble structures in such graphs. Detecting bubbles is hence an imp...
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Identifiers and source
- Literature Corpus work
- 8094bca2-78e0-51a5-a755-c9868d42bb7a
- DOI
- 10.1101/2021.03.23.436631