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A rapid method to determine the genetic lineage of <i>Escherichia coli</i> using open reading frame composition in the shallow sequencing

2024-07-12

Abstract excerpt

Determining the genetic background of bacterial isolates and evaluating the genetic relatedness among these isolates in a short time period are important to identify the spreading route(s) in cases of healthcare-associated infections and outbreaks caused by antimicrobial-resistant bacteria. Previously, we proposed a shallow sequencing (Shall-seq) procedure to determine the genetic backgrounds of clinical isolates...

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Literature Corpus work
774396d8-ce59-5a12-b453-3c6c36ac56b9
DOI
10.1101/2024.07.11.601999
Open publication

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A rapid method to determine the genetic lineage of <i>Escherichia coli</i> using open reading frame composition in the shallow sequencingDOI 10.1101/2024.07.11.601999
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