Article

GEOexplorer: an R/Bioconductor package for gene expression analysis and visualisation

2021-10-12

Abstract excerpt

<h4>Background</h4> Over the past three decades there have been numerous molecular biology developments that have led to an explosion in the number of gene expression studies being performed. Many of these gene expression studies publish their data to the public database GEO, making them freely available. By analysing gene expression datasets, researchers can identify genes that are differentially expressed betwe...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 65a720a7-2811-5196-9a88-7663a3dbf4d8
DOI: 10.1101/2021.10.06.459411

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

GEOexplorer: an R/Bioconductor package for gene expression analysis and visualisationDOI 10.1101/2021.10.06.459411Read

Gene expression data visualization tool on the o²S²PARC platformSemantic proximity Read

ideal: an R/Bioconductor package for Interactive Differential Expression AnalysisSemantic proximity Read

EGIDExpress: An Interactive Shiny Web App to Visualize and Share Large Biological DatasetsSemantic proximity Read

GSAR: Bioconductor package for Gene Set analysis in R.Semantic proximity Read

Differential Expression Gene Explorer (DrEdGE): A tool for generating interactive online data visualizations for exploration of quantitative transcript abundance datasetsSemantic proximity Read

RichPathR: a gene set enrichment analysis and visualization toolSemantic proximity Read

OmicsView: omics data analysis through interactive visual analyticsSemantic proximity Read

A comparative study of statistical methods for identifying differentially expressed genes in spatial transcriptomicsSemantic proximity Read

GeNNet: An Integrated Platform for Unifying Scientific Workflow Management and Graph Databases for Transcriptome Data AnalysisSemantic proximity Read

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasetsSemantic proximity Read

NeuroVar: An Open-source Tool for Gene Expression and Variation Data Visualization for Biomarkers of Neurological DiseasesSemantic proximity Read

SEURAT: visual analytics for the integrated analysis of microarray data.Semantic proximity Read