Article

From components to communities: bringing network science to clustering for genomic epidemiology

2022-08-23

Abstract excerpt

Defining clusters of epidemiologically-related infections is a common problem in the surveillance of infectious disease. A popular method for generating clusters is pairwise distance clustering, which assigns pairs of sequences to the same cluster if their genetic distance falls below some threshold. The result is often represented as a network or graph of infections. A connected component is a set of interconnect...

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Literature Corpus work: 5eb9b07b-b9ca-5e0c-a8aa-f2166f64ffeb
DOI: 10.1101/2022.08.22.504699

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