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Genome-Wide Association Mapping and Integrated Transcriptomic-Genomic Analysis Reveal Candidate Genes for Grain Transparency in Rice.

International journal of molecular sciences - 28 Jun 2026

Cai Fuge, Wang Fujun, Nie Shuai, Zheng Minhua, Bai Song, Li Hui, Tan Meilin, Chen Mengquan, Liu Dilin, Yang Wu

Abstract excerpt

Grain transparency (GT) is a key determinant of rice appearance quality and consumer preference, yet its genetic basis remains poorly understood. In this study, we evaluated GT in a panel of 450 rice accessions grown in two environments (Guangzhou and Yangjiang). Nineteen quantitative trait loci (QTL) for GT were identified by a genome-wide association study (GWAS), distributed across all rice chromosomes except...

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Chromosomes, Plant
Edible Grain
Gene Expression Regulation, Plant
Linkage Disequilibrium
Oryza

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Quantitative Trait Loci

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PMID: 42450108
DOI: 10.3390/ijms27135835
PMCID: PMC13361321

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 1 Sept 2026.

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