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Genomic Surveillance of Endemic Human Coronaviruses in Côte d'Ivoire Using Targeted Hybrid-Capture Sequencing.

Viruses - 17 Jun 2026

M'bra Ange-Michèle, Meite Syndou, Kadjo Herve A, Kouakou Luc Venance, Ouattara Yakoura, Kane Mouhamed, Kouassi Helene A, Ndiaye Ndeye Awa, Koumba-Koumba Olivia Cariolh, Mouliom Alida, Sankhe Safiétou, Ngolo David Coulibaly, Dia Ndongo, Adjogoua Edgard, Diagne Moussa Moise

Abstract excerpt

Endemic human coronaviruses (HCoVs) are important contributors to respiratory infections, yet genomic data from sub-Saharan Africa remain limited. We analyzed 13,530 nasopharyngeal samples collected through the national influenza sentinel surveillance network in Côte d'Ivoire between 2022 and 2024 to characterize the circulation and genomic diversity of endemic HCoVs. A subset of 52 RT-qPCR-positive samples with...

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Identifiers

PMID: 42357687
DOI: 10.3390/v18060678
PMCID: PMC13307596

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026.

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