Integration of proxy intermediate omics traits into a nonlinear two-step model for accurate phenotypic prediction.

doi:10.1007/s00122-026-05171-3

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Article

Integration of proxy intermediate omics traits into a nonlinear two-step model for accurate phenotypic prediction.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik - 5 Mar 2026

Yoshioka Hayato, Mary-Huard Tristan, Aubert Julie, Toda Yusuke, Ohmori Yoshihiro, Yamasaki Yuji, Tsujimoto Hisashi, Takahashi Hirokazu, Nakazono Mikio, Takanashi Hideki, Fujiwara Toru, Tsuda Mai, Kaga Akito, Inaba Jun, Fuji Yushiro, Hirai Masami Yokota, Nose Yui, Kumaishi Kie, Usui Erika, Kobori Shungo, Sato Takumi, Narukawa Megumi, Ichihashi Yasunori, Iwata Hiroyoshi

Abstract excerpt

Intermediate omics traits, which mediate the effects of genetic variation on phenotypic traits, are increasingly recognized as valuable components of genetic evaluation. In particular, rhizosphere microbiota play a crucial role in plant health and productivity; however, their complex interactions with host genetics remain challenging to model. Although two-step modeling frameworks have been proposed to integrate...

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PMID: 41784851
DOI: 10.1007/s00122-026-05171-3
PMCID: PMC12963143

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