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Article

Vcfexpress: flexible, rapid user-expressions to filter and format VCFs.

Bioinformatics (Oxford, England) - 4 Mar 2025

Pedersen Brent S, Quinlan Aaron R

Abstract excerpt

MOTIVATION: Variant call format (VCF) files are the standard output format for various software tools that identify genetic variation from DNA sequencing experiments. Downstream analyses require the ability to query, filter, and modify them simply and efficiently. Several tools are available to perform these operations from the command line, including BCFTools, vembrane, slivar, and others. RESULTS: Here, we...

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Topics

Software
Sequence Analysis, DNA
Programming Languages
Genetic Variation
High-Throughput Nucleotide Sequencing
Computational Biology

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Identifiers

PMID: 40037622
DOI: 10.1093/bioinformatics/btaf097
PMCID: PMC11904302

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