Article
A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity.
GigaScience - 6 Jan 2025
Oriowo Temitope Opeyemi, Chrysostomakis Ioannis, Martin Sebastian, Kukowka Sandra, Brown Thomas, Winkler Sylke, Myers Eugene W, Böhne Astrid, Stange Madlen
Abstract excerpt
BACKGROUND: In this study, we present an in-depth analysis of the Eurasian minnow (Phoxinus phoxinus) genome, highlighting its genetic diversity, structural variations, and evolutionary adaptations. We generated an annotated haplotype-phased, chromosome-level genome assembly (2n = 50) by integrating high-fidelity (HiFi) long reads and chromosome conformation capture data (Hi-C). RESULTS: We achieved a haploid...
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