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Article

Facilitating phenotyping from clinical texts: the medkit library.

Bioinformatics (Oxford, England) - 28 Nov 2024

Neuraz Antoine, Vaillant Ghislain, Arias Camila, Birot Olivier, Huynh Kim-Tam, Fabacher Thibaut, Rogier Alice, Garcelon Nicolas, Lerner Ivan, Rance Bastien, Coulet Adrien

Abstract excerpt

SUMMARY: Phenotyping consists in applying algorithms to identify individuals associated with a specific, potentially complex, trait or condition, typically out of a collection of Electronic Health Records (EHRs). Because a lot of the clinical information of EHRs are lying in texts, phenotyping from text takes an important role in studies that rely on the secondary use of EHRs. However, the heterogeneity and...

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PMID: 39546377
DOI: 10.1093/bioinformatics/btae681
PMCID: PMC11645105

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