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Whole-genome-based taxonomy as the most accurate approach to identify Flavobacterium species.

FEMS microbiology letters - 9 Jan 2024

Gélinas Vincent, Paquet Valérie E, Paquet Maude F, Vincent Antony T, Charette Steve J

Abstract excerpt

The genus Flavobacterium comprises a diversity of species, including fish pathogens. Multiple techniques have been used to identify isolates of this genus, such as phenotyping, polymerase chain reaction genotyping, and in silico whole-genome taxonomy. In this study, we demonstrate that whole-genome-based taxonomy, using average nucleotide identity and molecular phylogeny, is the most accurate approach for...

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PMID: 39439205
DOI: 10.1093/femsle/fnae089
PMCID: PMC11562821

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