Adaptive gene loss in the common bean pan-genome during range expansion and domestication.

doi:10.1038/s41467-024-51032-2

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Community

Back to search

Article

Adaptive gene loss in the common bean pan-genome during range expansion and domestication.

Nature communications - 7 Aug 2024

Cortinovis Gaia, Vincenzi Leonardo, Anderson Robyn, Marturano Giovanni, Marsh Jacob Ian, Bayer Philipp Emanuel, Rocchetti Lorenzo, Frascarelli Giulia, Lanzavecchia Giovanna, Pieri Alice, Benazzo Andrea, Bellucci Elisa, Di Vittori Valerio, Nanni Laura, Ferreira Fernández Juan José, Rossato Marzia, Aguilar Orlando Mario, Morrell Peter Laurent, Rodriguez Monica, Gioia Tania, Neumann Kerstin, Alvarez Diaz Juan Camilo, Gratias Ariane, Klopp Christophe, Bitocchi Elena, Geffroy Valérie, Delledonne Massimo, Edwards David, Papa Roberto

Abstract excerpt

The common bean (Phaseolus vulgaris L.) is a crucial legume crop and an ideal evolutionary model to study adaptive diversity in wild and domesticated populations. Here, we present a common bean pan-genome based on five high-quality genomes and whole-genome reads representing 339 genotypes. It reveals ~234 Mb of additional sequences containing 6,905 protein-coding genes missing from the reference, constituting 49%...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Adaptation, Physiological

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Crops, Agricultural

Share to Domestication

Share to Evolution, Molecular

Share to Genome, Plant

Share to Phaseolus

Share to Plant Breeding

Share to Selection, Genetic

Source

Open in PubMed Open full text

Identifiers

PMID: 39107305
DOI: 10.1038/s41467-024-51032-2
PMCID: PMC11303546

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Adaptive gene loss in the common bean pan-genome during range expansion and domestication.PMID 39107305Read ↗

Genomic history of the origin and domestication of common bean unveils its closest sister species.Semantic proximity Read ↗

Selection and adaptive introgression guided the complex evolutionary history of the European common bean.Semantic proximity Read ↗

Selection and adaptive introgression guided the complex evolutionary history of the European common beanSemantic proximity Read ↗

Resequencing of Common Bean Identifies Regions of Inter-Gene Pool Introgression and Provides Comprehensive Resources for Molecular Breeding.Semantic proximity Read ↗

A reference genome for common bean and genome-wide analysis of dual domestications.Semantic proximity Read ↗

Whole-genome resequencing of common bean elite breeding lines.Semantic proximity Read ↗

High-quality genome assembly and pan-genome studies facilitate genetic discovery in mung bean and its improvement.Semantic proximity Read ↗

Telomere-to-telomere genome of common bean (Phaseolus vulgaris L., YP4)Semantic proximity Read ↗

Ancient genomes reveal early Andean farmers selected common beans while preserving diversity.Semantic proximity Read ↗

Genome resources for underutilised legume crops: genome sizes, genome skimming and marker developmentSemantic proximity Read ↗

Exploring Pan-Genomes of Crops: Genomic Resources and Tools for Unraveling Gene Evolution, Function, and AdaptationSemantic proximity Read ↗

The giant diploid faba genome unlocks variation in a global protein crop.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.