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Phylogeography and gene pool analysis of highly pathogenic avian influenza H5N1 viruses reported in India from 2006 to 2021.

Archives of virology - 25 Apr 2024

Tare Deeksha S, Keng Sachin S, Walimbe Atul M, Pawar Shailesh D

Abstract excerpt

India has reported highly pathogenic avian influenza (HPAI) H5N1 virus outbreaks since 2006, with the first human case reported in 2021. These included viruses belonging to the clades 2.2, 2.2.2, 2.2.2.1, 2.3.2.1a, and 2.3.2.1c. There are currently no data on the gene pool of HPAI H5N1 viruses in India. Molecular clock and phylogeography analysis of the HA and NA genes; and phylogenetic analysis of the internal...

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PMID: 38664271
DOI: 10.1007/s00705-024-06032-4

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