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Article

Towards accurate indel calling for oncopanel sequencing through an international pipeline competition at precisionFDA.

Scientific reports - 8 Apr 2024

Gong Binsheng, Lababidi Samir, Kusko Rebecca, Bouri Khaled, Prezek Sarah, Thovarai Vishal, Prasanna Anish, Maier Ezekiel J, Golkaram Mahdi, Sun Xingqiang, Kyriakidis Konstantinos, Kitajima João Paulo, Ebrahim Sahraeian Sayed Mohammad, Guo Yunfei, Johanson Elaine, Jones Wendell, Tong Weida, Xu Joshua

Abstract excerpt

Accurately calling indels with next-generation sequencing (NGS) data is critical for clinical application. The precisionFDA team collaborated with the U.S. Food and Drug Administration's (FDA's) National Center for Toxicological Research (NCTR) and successfully completed the NCTR Indel Calling from Oncopanel Sequencing Data Challenge, to evaluate the performance of indel calling pipelines. Top performers were...

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Identifiers

PMID: 38589653
DOI: 10.1038/s41598-024-58573-y
PMCID: PMC11001604

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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