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Article

Systematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samples.

Nature communications - 15 Jan 2024

Pipek Orsolya Anna, Medgyes-Horváth Anna, Stéger József, Papp Krisztián, Visontai Dávid, Koopmans Marion, Nieuwenhuijse David, Oude Munnink Bas B, Csabai István

Abstract excerpt

Systematic monitoring of SARS-CoV-2 co-infections between different lineages and assessing the risk of intra-host recombinant emergence are crucial for forecasting viral evolution. Here we present a comprehensive analysis of more than 2 million SARS-CoV-2 raw read datasets submitted to the European COVID-19 Data Portal to identify co-infections and intra-host recombination. Co-infection was observed in 0.35% of...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 38225254
DOI: 10.1038/s41467-023-43391-z
PMCID: PMC10789779

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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