Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

PanVA: Pangenomic Variant Analysis.

IEEE transactions on visualization and computer graphics - 1 Aug 2024

van den Brandt Astrid, Jonkheer Eef M, van Workum Dirk-Jan M, van de Wetering Huub, Smit Sandra, Vilanova Anna

Abstract excerpt

Genomics researchers increasingly use multiple reference genomes to comprehensively explore genetic variants underlying differences in detectable characteristics between organisms. Pangenomes allow for an efficient data representation of multiple related genomes and their associated metadata. However, current visual analysis approaches for exploring these complex genotype-phenotype relationships are often based...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computer Graphics
Share to Genetic Variation

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genomics

Share to Phenotype

Share to Software

Share to User-Computer Interface

Source

Identifiers

PMID: 37267130
DOI: 10.1109/TVCG.2023.3282364

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

PanVA: Pangenomic Variant Analysis.PMID 37267130Read ↗

VisVariant: A java program to visualise genetic variants in next-generation sequencing dataSemantic proximity Read ↗

VRPG: an interactive visualization framework for reference-projected pangenome graphSemantic proximity Read ↗

Panoptes: web-based exploration of large scale genome variation data.Semantic proximity Read ↗

SNPversity: a web-based tool for visualizing diversity.Semantic proximity Read ↗

BioJS-HGV Viewer: Genetic Variation VisualizerSemantic proximity Read ↗

Visualization tools for human structural variations identified by whole-genome sequencing.Semantic proximity Read ↗

GCViT: a method for interactive, genome-wide visualization of resequencing and SNP array data.Semantic proximity Read ↗

XtractPAV: An Automated Pipeline for Identifying Presence–Absence Variations Across Multiple GenomesSemantic proximity Read ↗

Developing pangenomes for large and complex plant genomes and their representation formats.Semantic proximity Read ↗

GermVersity: A free and user-friendly interface to enhance the visualization and analysis of genebank data.Semantic proximity Read ↗

Approaches to Studying Viral Pangenome Variation Graphs.Semantic proximity Read ↗

Pan1c : a pipeline to easily build chromosome-level pangenome graphsSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.