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Article

SNV-FEAST: microbial source tracking with single nucleotide variants.

Genome biology - 30 Apr 2023

Briscoe Leah, Halperin Eran, Garud Nandita R

Abstract excerpt

Elucidating the sources of a microbiome can provide insight into the ecological dynamics responsible for the formation of these communities. Source tracking approaches to date leverage species abundance information; however, single nucleotide variants (SNVs) may be more informative because of their high specificity to certain sources. To overcome the computational burden of utilizing all SNVs for a given sample,...

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Identifiers

PMID: 37121994
DOI: 10.1186/s13059-023-02927-8
PMCID: PMC10150486

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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