Article
Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets.
Bioinformatics (Oxford, England) - 3 Apr 2023
Liu Yi, Elsworth Benjamin L, Gaunt Tom R
Abstract excerpt
MOTIVATION: Human traits are typically represented in both the biomedical literature and large population studies as descriptive text strings. Whilst a number of ontologies exist, none of these perfectly represent the entire human phenome and exposome. Mapping trait names across large datasets is therefore time-consuming and challenging. Recent developments in language modelling have created new methods for...
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