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Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus).

BMC genomics - 5 Oct 2022

Carrier Alexandra, Prunier Julien, Poisson William, Trottier-Lavoie Mallorie, Gilbert Isabelle, Cavedon Maria, Pokharel Kisun, Kantanen Juha, Musiani Marco, Côté Steeve D, Albert Vicky, Taillon Joëlle, Bourret Vincent, Droit Arnaud, Robert Claude

Abstract excerpt

BACKGROUND: Development of large single nucleotide polymorphism (SNP) arrays can make genomic data promptly available for conservation problematic. Medium and high-density panels can be designed with sufficient coverage to offer a genome-wide perspective and the generated genotypes can be used to assess different genetic metrics related to population structure, relatedness, or inbreeding. SNP genotyping could...

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Alleles
Chromosome Mapping
Genotype
Polymorphism, Single Nucleotide

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 36199020
DOI: 10.1186/s12864-022-08899-6
PMCID: PMC9533608

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