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Genome wide copy number variations using Porcine 60K SNP Beadchip in Landlly pigs.

Animal biotechnology - 1 Nov 2023

Panda Snehasmita, Kumar Amit, Gaur Gyanendra Kumar, Ahmad Sheikh Firdous, Chauhan Anuj, Mehrotra Arnav, Dutt Triveni

Abstract excerpt

In the present study, Porcine 60K SNP genotype data from 69 Landlly pigs were used to explore Copy Number Variations (CNVs) across the autosomes. A total of 386 CNVs were identified using Hidden Markov Model (HMM) in PennCNV software, which were subsequently aggregated to 115 CNV regions (CNVRs). Among the total detected CNVRs, 58 gain, 49 were loss type while remaining 8 events were both gain and loss types....

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PMID: 35369845
DOI: 10.1080/10495398.2022.2056047

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