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Article

PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology.

Journal of biomedical informatics - 1 May 2022

Yan Shankai, Luo Ling, Lai Po-Ting, Veltri Daniel, Oler Andrew J, Xirasagar Sandhya, Ghosh Rajarshi, Similuk Morgan, Robinson Peter N, Lu Zhiyong

Abstract excerpt

The study aims at developing a neural network model to improve the performance of Human Phenotype Ontology (HPO) concept recognition tools. We used the terms, definitions, and comments about the phenotypic concepts in the HPO database to train our model. The document to be analyzed is first split into sentences and annotated with a base method to generate candidate concepts. The sentences, along with the...

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Identifiers

PMID: 35351638
DOI: 10.1016/j.jbi.2022.104059
PMCID: PMC11040548

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026.

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