AutoPCR: automated phenotype concept recognition by prompting.

Abstract excerpt

MOTIVATION: Phenotype concept recognition (CR) is a fundamental task in biomedical text mining. However, existing methods either require ontology-specific training, making them struggle to generalize across diverse text styles and evolving biomedical terminology, or depend on general-purpose large language models that lack necessary domain knowledge. RESULTS: To address these limitations, we propose AutoPCR, a...

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