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Article

Emerging SARS-CoV-2 Diversity Revealed by Rapid Whole-Genome Sequence Typing.

Genome biology and evolution - 1 Sept 2021

Moustafa Ahmed M, Planet Paul J

Abstract excerpt

Discrete classification of SARS-CoV-2 viral genotypes can identify emerging strains and detect geographic spread, viral diversity, and transmission events. We developed a tool (GNU-based Virus IDentification [GNUVID]) that integrates whole-genome multilocus sequence typing and a supervised machine learning random forest-based classifier. We used GNUVID to assign sequence type (ST) profiles to all high-quality...

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Identifiers

PMID: 34432021
DOI: 10.1093/gbe/evab197
PMCID: PMC8449825

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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