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Rapid genome-wide sequence typing of African swine fever virus based on alleles.

Virus research - 1 May 2021

Xiong Dongyan, Zhang Xiaoxu, Xiong Jin, Yu Junping, Wei Hongping

Abstract excerpt

Rapid and accurate molecular typing of African swine fever virus (ASFV) during outbreaks is important to reveal diversity and sourcing of ASFV. Here we present a new way to perform rapid genome-wide multi-locus sequence typing of ASFV using an allele calling based on gene by gene approach. Using open-accessed chewBBACA software, 41 publicly available ASFV genomes were analyzed to optimize the parameters to find...

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Identifiers

PMID: 33667625
DOI: 10.1016/j.virusres.2021.198357

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

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