SARS Coronavirus-2 variant tracing within the first Coronavirus Disease 19 clusters in northern Germany.

doi:10.1016/j.cmi.2020.09.034

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Article

SARS Coronavirus-2 variant tracing within the first Coronavirus Disease 19 clusters in northern Germany.

Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases - 1 Jan 2021

Pfefferle Susanne, Günther Thomas, Kobbe Robin, Czech-Sioli Manja, Nörz Dominic, Santer René, Oh Jun, Kluge Stefan, Oestereich Lisa, Peldschus Kersten, Indenbirken Daniela, Huang Jiabin, Grundhoff Adam, Aepfelbacher Martin, Knobloch Johannes K, Lütgehetmann Marc, Fischer Nicole

Abstract excerpt

OBJECTIVES: Investigation whether in depth characterization of virus variant patterns can be used for epidemiological analysis of the first severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection clusters in Hamburg, Germany. METHODS: Metagenomic RNA-sequencing and amplicon-sequencing and subsequent variant calling in 25 respiratory samples from SARS-CoV-2 infected patients involved in the earliest...

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PMID: 33007476
DOI: 10.1016/j.cmi.2020.09.034
PMCID: PMC7524521

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