Article
Multiple Maize Reference Genomes Impact the Identification of Variants by Genome-Wide Association Study in a Diverse Inbred Panel.
The plant genome - 1 Jun 2019
Gage Joseph L, Vaillancourt Brieanne, Hamilton John P, Manrique-Carpintero Norma C, Gustafson Timothy J, Barry Kerrie, Lipzen Anna, Tracy William F, Mikel Mark A, Kaeppler Shawn M, Buell C Robin, de Leon Natalia
Abstract excerpt
Use of a single reference genome for genome-wide association studies (GWAS) limits the gene space represented to that of a single accession. This limitation can complicate identification and characterization of genes located within presence-absence variations (PAVs). In this study, we present the draft de novo genome assembly of 'PHJ89', an 'Oh43'-type inbred line of maize ( L.). From three separate reference...
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